TY - JOUR T1 - Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. JF - Nat Genet Y1 - 2011 A1 - Soler Artigas, Maria A1 - Loth, Daan W A1 - Wain, Louise V A1 - Gharib, Sina A A1 - Obeidat, Ma'en A1 - Tang, Wenbo A1 - Zhai, Guangju A1 - Zhao, Jing Hua A1 - Smith, Albert Vernon A1 - Huffman, Jennifer E A1 - Albrecht, Eva A1 - Jackson, Catherine M A1 - Evans, David M A1 - Cadby, Gemma A1 - Fornage, Myriam A1 - Manichaikul, Ani A1 - Lopez, Lorna M A1 - Johnson, Toby A1 - Aldrich, Melinda C A1 - Aspelund, Thor A1 - Barroso, Inês A1 - Campbell, Harry A1 - Cassano, Patricia A A1 - Couper, David J A1 - Eiriksdottir, Gudny A1 - Franceschini, Nora A1 - Garcia, Melissa A1 - Gieger, Christian A1 - Gislason, Gauti Kjartan A1 - Grkovic, Ivica A1 - Hammond, Christopher J A1 - Hancock, Dana B A1 - Harris, Tamara B A1 - Ramasamy, Adaikalavan A1 - Heckbert, Susan R A1 - Heliövaara, Markku A1 - Homuth, Georg A1 - Hysi, Pirro G A1 - James, Alan L A1 - Jankovic, Stipan A1 - Joubert, Bonnie R A1 - Karrasch, Stefan A1 - Klopp, Norman A1 - Koch, Beate A1 - Kritchevsky, Stephen B A1 - Launer, Lenore J A1 - Liu, Yongmei A1 - Loehr, Laura R A1 - Lohman, Kurt A1 - Loos, Ruth J F A1 - Lumley, Thomas A1 - Al Balushi, Khalid A A1 - Ang, Wei Q A1 - Barr, R Graham A1 - Beilby, John A1 - Blakey, John D A1 - Boban, Mladen A1 - Boraska, Vesna A1 - Brisman, Jonas A1 - Britton, John R A1 - Brusselle, Guy G A1 - Cooper, Cyrus A1 - Curjuric, Ivan A1 - Dahgam, Santosh A1 - Deary, Ian J A1 - Ebrahim, Shah A1 - Eijgelsheim, Mark A1 - Francks, Clyde A1 - Gaysina, Darya A1 - Granell, Raquel A1 - Gu, Xiangjun A1 - Hankinson, John L A1 - Hardy, Rebecca A1 - Harris, Sarah E A1 - Henderson, John A1 - Henry, Amanda A1 - Hingorani, Aroon D A1 - Hofman, Albert A1 - Holt, Patrick G A1 - Hui, Jennie A1 - Hunter, Michael L A1 - Imboden, Medea A1 - Jameson, Karen A A1 - Kerr, Shona M A1 - Kolcic, Ivana A1 - Kronenberg, Florian A1 - Liu, Jason Z A1 - Marchini, Jonathan A1 - McKeever, Tricia A1 - Morris, Andrew D A1 - Olin, Anna-Carin A1 - Porteous, David J A1 - Postma, Dirkje S A1 - Rich, Stephen S A1 - Ring, Susan M A1 - Rivadeneira, Fernando A1 - Rochat, Thierry A1 - Sayer, Avan Aihie A1 - Sayers, Ian A1 - Sly, Peter D A1 - Smith, George Davey A1 - Sood, Akshay A1 - Starr, John M A1 - Uitterlinden, André G A1 - Vonk, Judith M A1 - Wannamethee, S Goya A1 - Whincup, Peter H A1 - Wijmenga, Cisca A1 - Williams, O Dale A1 - Wong, Andrew A1 - Mangino, Massimo A1 - Marciante, Kristin D A1 - McArdle, Wendy L A1 - Meibohm, Bernd A1 - Morrison, Alanna C A1 - North, Kari E A1 - Omenaas, Ernst A1 - Palmer, Lyle J A1 - Pietiläinen, Kirsi H A1 - Pin, Isabelle A1 - Pola Sbreve Ek, Ozren A1 - Pouta, Anneli A1 - Psaty, Bruce M A1 - Hartikainen, Anna-Liisa A1 - Rantanen, Taina A1 - Ripatti, Samuli A1 - Rotter, Jerome I A1 - Rudan, Igor A1 - Rudnicka, Alicja R A1 - Schulz, Holger A1 - Shin, So-Youn A1 - Spector, Tim D A1 - Surakka, Ida A1 - Vitart, Veronique A1 - Völzke, Henry A1 - Wareham, Nicholas J A1 - Warrington, Nicole M A1 - Wichmann, H-Erich A1 - Wild, Sarah H A1 - Wilk, Jemma B A1 - Wjst, Matthias A1 - Wright, Alan F A1 - Zgaga, Lina A1 - Zemunik, Tatijana A1 - Pennell, Craig E A1 - Nyberg, Fredrik A1 - Kuh, Diana A1 - Holloway, John W A1 - Boezen, H Marike A1 - Lawlor, Debbie A A1 - Morris, Richard W A1 - Probst-Hensch, Nicole A1 - Kaprio, Jaakko A1 - Wilson, James F A1 - Hayward, Caroline A1 - Kähönen, Mika A1 - Heinrich, Joachim A1 - Musk, Arthur W A1 - Jarvis, Deborah L A1 - Gläser, Sven A1 - Jarvelin, Marjo-Riitta A1 - Ch Stricker, Bruno H A1 - Elliott, Paul A1 - O'Connor, George T A1 - Strachan, David P A1 - London, Stephanie J A1 - Hall, Ian P A1 - Gudnason, Vilmundur A1 - Tobin, Martin D KW - Child KW - European Continental Ancestry Group KW - Genome-Wide Association Study KW - Humans KW - Pulmonary Disease, Chronic Obstructive KW - Respiratory Function Tests AB -

Pulmonary function measures reflect respiratory health and are used in the diagnosis of chronic obstructive pulmonary disease. We tested genome-wide association with forced expiratory volume in 1 second and the ratio of forced expiratory volume in 1 second to forced vital capacity in 48,201 individuals of European ancestry with follow up of the top associations in up to an additional 46,411 individuals. We identified new regions showing association (combined P < 5 × 10(-8)) with pulmonary function in or near MFAP2, TGFB2, HDAC4, RARB, MECOM (also known as EVI1), SPATA9, ARMC2, NCR3, ZKSCAN3, CDC123, C10orf11, LRP1, CCDC38, MMP15, CFDP1 and KCNE2. Identification of these 16 new loci may provide insight into the molecular mechanisms regulating pulmonary function and into molecular targets for future therapy to alleviate reduced lung function.

VL - 43 IS - 11 U1 - http://www.ncbi.nlm.nih.gov/pubmed/21946350?dopt=Abstract ER - TY - JOUR T1 - Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. JF - Am J Respir Crit Care Med Y1 - 2012 A1 - Wilk, Jemma B A1 - Shrine, Nick R G A1 - Loehr, Laura R A1 - Zhao, Jing Hua A1 - Manichaikul, Ani A1 - Lopez, Lorna M A1 - Smith, Albert Vernon A1 - Heckbert, Susan R A1 - Smolonska, Joanna A1 - Tang, Wenbo A1 - Loth, Daan W A1 - Curjuric, Ivan A1 - Hui, Jennie A1 - Cho, Michael H A1 - Latourelle, Jeanne C A1 - Henry, Amanda P A1 - Aldrich, Melinda A1 - Bakke, Per A1 - Beaty, Terri H A1 - Bentley, Amy R A1 - Borecki, Ingrid B A1 - Brusselle, Guy G A1 - Burkart, Kristin M A1 - Chen, Ting-Hsu A1 - Couper, David A1 - Crapo, James D A1 - Davies, Gail A1 - Dupuis, Josée A1 - Franceschini, Nora A1 - Gulsvik, Amund A1 - Hancock, Dana B A1 - Harris, Tamara B A1 - Hofman, Albert A1 - Imboden, Medea A1 - James, Alan L A1 - Khaw, Kay-Tee A1 - Lahousse, Lies A1 - Launer, Lenore J A1 - Litonjua, Augusto A1 - Liu, Yongmei A1 - Lohman, Kurt K A1 - Lomas, David A A1 - Lumley, Thomas A1 - Marciante, Kristin D A1 - McArdle, Wendy L A1 - Meibohm, Bernd A1 - Morrison, Alanna C A1 - Musk, Arthur W A1 - Myers, Richard H A1 - North, Kari E A1 - Postma, Dirkje S A1 - Psaty, Bruce M A1 - Rich, Stephen S A1 - Rivadeneira, Fernando A1 - Rochat, Thierry A1 - Rotter, Jerome I A1 - Soler Artigas, Maria A1 - Starr, John M A1 - Uitterlinden, André G A1 - Wareham, Nicholas J A1 - Wijmenga, Cisca A1 - Zanen, Pieter A1 - Province, Michael A A1 - Silverman, Edwin K A1 - Deary, Ian J A1 - Palmer, Lyle J A1 - Cassano, Patricia A A1 - Gudnason, Vilmundur A1 - Barr, R Graham A1 - Loos, Ruth J F A1 - Strachan, David P A1 - London, Stephanie J A1 - Boezen, H Marike A1 - Probst-Hensch, Nicole A1 - Gharib, Sina A A1 - Hall, Ian P A1 - O'Connor, George T A1 - Tobin, Martin D A1 - Stricker, Bruno H KW - Aged KW - Female KW - Forced Expiratory Volume KW - Genome-Wide Association Study KW - Humans KW - Male KW - Middle Aged KW - Nerve Tissue Proteins KW - Polymorphism, Single Nucleotide KW - Pulmonary Disease, Chronic Obstructive KW - Receptors, Nicotinic KW - Receptors, Serotonin, 5-HT4 KW - Smoking KW - Vital Capacity AB -

RATIONALE: Genome-wide association studies (GWAS) have identified loci influencing lung function, but fewer genes influencing chronic obstructive pulmonary disease (COPD) are known.

OBJECTIVES: Perform meta-analyses of GWAS for airflow obstruction, a key pathophysiologic characteristic of COPD assessed by spirometry, in population-based cohorts examining all participants, ever smokers, never smokers, asthma-free participants, and more severe cases.

METHODS: Fifteen cohorts were studied for discovery (3,368 affected; 29,507 unaffected), and a population-based family study and a meta-analysis of case-control studies were used for replication and regional follow-up (3,837 cases; 4,479 control subjects). Airflow obstruction was defined as FEV(1) and its ratio to FVC (FEV(1)/FVC) both less than their respective lower limits of normal as determined by published reference equations.

MEASUREMENTS AND MAIN RESULTS: The discovery meta-analyses identified one region on chromosome 15q25.1 meeting genome-wide significance in ever smokers that includes AGPHD1, IREB2, and CHRNA5/CHRNA3 genes. The region was also modestly associated among never smokers. Gene expression studies confirmed the presence of CHRNA5/3 in lung, airway smooth muscle, and bronchial epithelial cells. A single-nucleotide polymorphism in HTR4, a gene previously related to FEV(1)/FVC, achieved genome-wide statistical significance in combined meta-analysis. Top single-nucleotide polymorphisms in ADAM19, RARB, PPAP2B, and ADAMTS19 were nominally replicated in the COPD meta-analysis.

CONCLUSIONS: These results suggest an important role for the CHRNA5/3 region as a genetic risk factor for airflow obstruction that may be independent of smoking and implicate the HTR4 gene in the etiology of airflow obstruction.

VL - 186 IS - 7 U1 - http://www.ncbi.nlm.nih.gov/pubmed/22837378?dopt=Abstract ER - TY - JOUR T1 - Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. JF - PLoS Genet Y1 - 2012 A1 - Hancock, Dana B A1 - Soler Artigas, Maria A1 - Gharib, Sina A A1 - Henry, Amanda A1 - Manichaikul, Ani A1 - Ramasamy, Adaikalavan A1 - Loth, Daan W A1 - Imboden, Medea A1 - Koch, Beate A1 - McArdle, Wendy L A1 - Smith, Albert V A1 - Smolonska, Joanna A1 - Sood, Akshay A1 - Tang, Wenbo A1 - Wilk, Jemma B A1 - Zhai, Guangju A1 - Zhao, Jing Hua A1 - Aschard, Hugues A1 - Burkart, Kristin M A1 - Curjuric, Ivan A1 - Eijgelsheim, Mark A1 - Elliott, Paul A1 - Gu, Xiangjun A1 - Harris, Tamara B A1 - Janson, Christer A1 - Homuth, Georg A1 - Hysi, Pirro G A1 - Liu, Jason Z A1 - Loehr, Laura R A1 - Lohman, Kurt A1 - Loos, Ruth J F A1 - Manning, Alisa K A1 - Marciante, Kristin D A1 - Obeidat, Ma'en A1 - Postma, Dirkje S A1 - Aldrich, Melinda C A1 - Brusselle, Guy G A1 - Chen, Ting-Hsu A1 - Eiriksdottir, Gudny A1 - Franceschini, Nora A1 - Heinrich, Joachim A1 - Rotter, Jerome I A1 - Wijmenga, Cisca A1 - Williams, O Dale A1 - Bentley, Amy R A1 - Hofman, Albert A1 - Laurie, Cathy C A1 - Lumley, Thomas A1 - Morrison, Alanna C A1 - Joubert, Bonnie R A1 - Rivadeneira, Fernando A1 - Couper, David J A1 - Kritchevsky, Stephen B A1 - Liu, Yongmei A1 - Wjst, Matthias A1 - Wain, Louise V A1 - Vonk, Judith M A1 - Uitterlinden, André G A1 - Rochat, Thierry A1 - Rich, Stephen S A1 - Psaty, Bruce M A1 - O'Connor, George T A1 - North, Kari E A1 - Mirel, Daniel B A1 - Meibohm, Bernd A1 - Launer, Lenore J A1 - Khaw, Kay-Tee A1 - Hartikainen, Anna-Liisa A1 - Hammond, Christopher J A1 - Gläser, Sven A1 - Marchini, Jonathan A1 - Kraft, Peter A1 - Wareham, Nicholas J A1 - Völzke, Henry A1 - Stricker, Bruno H C A1 - Spector, Timothy D A1 - Probst-Hensch, Nicole M A1 - Jarvis, Deborah A1 - Jarvelin, Marjo-Riitta A1 - Heckbert, Susan R A1 - Gudnason, Vilmundur A1 - Boezen, H Marike A1 - Barr, R Graham A1 - Cassano, Patricia A A1 - Strachan, David P A1 - Fornage, Myriam A1 - Hall, Ian P A1 - Dupuis, Josée A1 - Tobin, Martin D A1 - London, Stephanie J KW - Forced Expiratory Volume KW - Gene Expression KW - Genome, Human KW - Genome-Wide Association Study KW - HLA-DQ Antigens KW - HLA-DQ beta-Chains KW - Humans KW - Lung KW - Nerve Tissue Proteins KW - Polymorphism, Single Nucleotide KW - Potassium Channels, Inwardly Rectifying KW - Pulmonary Disease, Chronic Obstructive KW - Receptors, Cell Surface KW - Smoking KW - SOX9 Transcription Factor KW - Vital Capacity AB -

Genome-wide association studies have identified numerous genetic loci for spirometic measures of pulmonary function, forced expiratory volume in one second (FEV(1)), and its ratio to forced vital capacity (FEV(1)/FVC). Given that cigarette smoking adversely affects pulmonary function, we conducted genome-wide joint meta-analyses (JMA) of single nucleotide polymorphism (SNP) and SNP-by-smoking (ever-smoking or pack-years) associations on FEV(1) and FEV(1)/FVC across 19 studies (total N = 50,047). We identified three novel loci not previously associated with pulmonary function. SNPs in or near DNER (smallest P(JMA = )5.00×10(-11)), HLA-DQB1 and HLA-DQA2 (smallest P(JMA = )4.35×10(-9)), and KCNJ2 and SOX9 (smallest P(JMA = )1.28×10(-8)) were associated with FEV(1)/FVC or FEV(1) in meta-analysis models including SNP main effects, smoking main effects, and SNP-by-smoking (ever-smoking or pack-years) interaction. The HLA region has been widely implicated for autoimmune and lung phenotypes, unlike the other novel loci, which have not been widely implicated. We evaluated DNER, KCNJ2, and SOX9 and found them to be expressed in human lung tissue. DNER and SOX9 further showed evidence of differential expression in human airway epithelium in smokers compared to non-smokers. Our findings demonstrated that joint testing of SNP and SNP-by-environment interaction identified novel loci associated with complex traits that are missed when considering only the genetic main effects.

VL - 8 IS - 12 U1 - http://www.ncbi.nlm.nih.gov/pubmed/23284291?dopt=Abstract ER - TY - JOUR T1 - A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium. JF - Genet Epidemiol Y1 - 2013 A1 - Tang, Weihong A1 - Teichert, Martina A1 - Chasman, Daniel I A1 - Heit, John A A1 - Morange, Pierre-Emmanuel A1 - Li, Guo A1 - Pankratz, Nathan A1 - Leebeek, Frank W A1 - Paré, Guillaume A1 - de Andrade, Mariza A1 - Tzourio, Christophe A1 - Psaty, Bruce M A1 - Basu, Saonli A1 - Ruiter, Rikje A1 - Rose, Lynda A1 - Armasu, Sebastian M A1 - Lumley, Thomas A1 - Heckbert, Susan R A1 - Uitterlinden, André G A1 - Lathrop, Mark A1 - Rice, Kenneth M A1 - Cushman, Mary A1 - Hofman, Albert A1 - Lambert, Jean-Charles A1 - Glazer, Nicole L A1 - Pankow, James S A1 - Witteman, Jacqueline C A1 - Amouyel, Philippe A1 - Bis, Joshua C A1 - Bovill, Edwin G A1 - Kong, Xiaoxiao A1 - Tracy, Russell P A1 - Boerwinkle, Eric A1 - Rotter, Jerome I A1 - Trégouët, David-Alexandre A1 - Loth, Daan W A1 - Stricker, Bruno H Ch A1 - Ridker, Paul M A1 - Folsom, Aaron R A1 - Smith, Nicholas L KW - Aged KW - Aging KW - Case-Control Studies KW - Cohort Studies KW - Female KW - Genome-Wide Association Study KW - Humans KW - Male KW - Meta-Analysis as Topic KW - Middle Aged KW - Polymorphism, Single Nucleotide KW - Regression Analysis KW - Risk Factors KW - Venous Thromboembolism AB -

Venous thromboembolism (VTE) is a common, heritable disease resulting in high rates of hospitalization and mortality. Yet few associations between VTE and genetic variants, all in the coagulation pathway, have been established. To identify additional genetic determinants of VTE, we conducted a two-stage genome-wide association study (GWAS) among individuals of European ancestry in the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) VTE consortium. The discovery GWAS comprised 1,618 incident VTE cases out of 44,499 participants from six community-based studies. Genotypes for genome-wide single-nucleotide polymorphisms (SNPs) were imputed to approximately 2.5 million SNPs in HapMap and association with VTE assessed using study-design appropriate regression methods. Meta-analysis of these results identified two known loci, in F5 and ABO. Top 1,047 tag SNPs (P ≤ 0.0016) from the discovery GWAS were tested for association in an additional 3,231 cases and 3,536 controls from three case-control studies. In the combined data from these two stages, additional genome-wide significant associations were observed on 4q35 at F11 (top SNP rs4253399, intronic to F11) and on 4q28 at FGG (rs6536024, 9.7 kb from FGG; P < 5.0 × 10(-13) for both). The associations at the FGG locus were not completely explained by previously reported variants. Loci at or near SUSD1 and OTUD7A showed borderline yet novel associations (P < 5.0 × 10(-6) ) and constitute new candidate genes. In conclusion, this large GWAS replicated key genetic associations in F5 and ABO, and confirmed the importance of F11 and FGG loci for VTE. Future studies are warranted to better characterize the associations with F11 and FGG and to replicate the new candidate associations.

VL - 37 IS - 5 U1 - http://www.ncbi.nlm.nih.gov/pubmed/23650146?dopt=Abstract ER - TY - JOUR T1 - Genome-wide association analysis identifies six new loci associated with forced vital capacity. JF - Nat Genet Y1 - 2014 A1 - Loth, Daan W A1 - Soler Artigas, Maria A1 - Gharib, Sina A A1 - Wain, Louise V A1 - Franceschini, Nora A1 - Koch, Beate A1 - Pottinger, Tess D A1 - Smith, Albert Vernon A1 - Duan, Qing A1 - Oldmeadow, Chris A1 - Lee, Mi Kyeong A1 - Strachan, David P A1 - James, Alan L A1 - Huffman, Jennifer E A1 - Vitart, Veronique A1 - Ramasamy, Adaikalavan A1 - Wareham, Nicholas J A1 - Kaprio, Jaakko A1 - Wang, Xin-Qun A1 - Trochet, Holly A1 - Kähönen, Mika A1 - Flexeder, Claudia A1 - Albrecht, Eva A1 - Lopez, Lorna M A1 - de Jong, Kim A1 - Thyagarajan, Bharat A1 - Alves, Alexessander Couto A1 - Enroth, Stefan A1 - Omenaas, Ernst A1 - Joshi, Peter K A1 - Fall, Tove A1 - Viñuela, Ana A1 - Launer, Lenore J A1 - Loehr, Laura R A1 - Fornage, Myriam A1 - Li, Guo A1 - Wilk, Jemma B A1 - Tang, Wenbo A1 - Manichaikul, Ani A1 - Lahousse, Lies A1 - Harris, Tamara B A1 - North, Kari E A1 - Rudnicka, Alicja R A1 - Hui, Jennie A1 - Gu, Xiangjun A1 - Lumley, Thomas A1 - Wright, Alan F A1 - Hastie, Nicholas D A1 - Campbell, Susan A1 - Kumar, Rajesh A1 - Pin, Isabelle A1 - Scott, Robert A A1 - Pietiläinen, Kirsi H A1 - Surakka, Ida A1 - Liu, Yongmei A1 - Holliday, Elizabeth G A1 - Schulz, Holger A1 - Heinrich, Joachim A1 - Davies, Gail A1 - Vonk, Judith M A1 - Wojczynski, Mary A1 - Pouta, Anneli A1 - Johansson, Asa A1 - Wild, Sarah H A1 - Ingelsson, Erik A1 - Rivadeneira, Fernando A1 - Völzke, Henry A1 - Hysi, Pirro G A1 - Eiriksdottir, Gudny A1 - Morrison, Alanna C A1 - Rotter, Jerome I A1 - Gao, Wei A1 - Postma, Dirkje S A1 - White, Wendy B A1 - Rich, Stephen S A1 - Hofman, Albert A1 - Aspelund, Thor A1 - Couper, David A1 - Smith, Lewis J A1 - Psaty, Bruce M A1 - Lohman, Kurt A1 - Burchard, Esteban G A1 - Uitterlinden, André G A1 - Garcia, Melissa A1 - Joubert, Bonnie R A1 - McArdle, Wendy L A1 - Musk, A Bill A1 - Hansel, Nadia A1 - Heckbert, Susan R A1 - Zgaga, Lina A1 - van Meurs, Joyce B J A1 - Navarro, Pau A1 - Rudan, Igor A1 - Oh, Yeon-Mok A1 - Redline, Susan A1 - Jarvis, Deborah L A1 - Zhao, Jing Hua A1 - Rantanen, Taina A1 - O'Connor, George T A1 - Ripatti, Samuli A1 - Scott, Rodney J A1 - Karrasch, Stefan A1 - Grallert, Harald A1 - Gaddis, Nathan C A1 - Starr, John M A1 - Wijmenga, Cisca A1 - Minster, Ryan L A1 - Lederer, David J A1 - Pekkanen, Juha A1 - Gyllensten, Ulf A1 - Campbell, Harry A1 - Morris, Andrew P A1 - Gläser, Sven A1 - Hammond, Christopher J A1 - Burkart, Kristin M A1 - Beilby, John A1 - Kritchevsky, Stephen B A1 - Gudnason, Vilmundur A1 - Hancock, Dana B A1 - Williams, O Dale A1 - Polasek, Ozren A1 - Zemunik, Tatijana A1 - Kolcic, Ivana A1 - Petrini, Marcy F A1 - Wjst, Matthias A1 - Kim, Woo Jin A1 - Porteous, David J A1 - Scotland, Generation A1 - Smith, Blair H A1 - Viljanen, Anne A1 - Heliövaara, Markku A1 - Attia, John R A1 - Sayers, Ian A1 - Hampel, Regina A1 - Gieger, Christian A1 - Deary, Ian J A1 - Boezen, H Marike A1 - Newman, Anne A1 - Jarvelin, Marjo-Riitta A1 - Wilson, James F A1 - Lind, Lars A1 - Stricker, Bruno H A1 - Teumer, Alexander A1 - Spector, Timothy D A1 - Melén, Erik A1 - Peters, Marjolein J A1 - Lange, Leslie A A1 - Barr, R Graham A1 - Bracke, Ken R A1 - Verhamme, Fien M A1 - Sung, Joohon A1 - Hiemstra, Pieter S A1 - Cassano, Patricia A A1 - Sood, Akshay A1 - Hayward, Caroline A1 - Dupuis, Josée A1 - Hall, Ian P A1 - Brusselle, Guy G A1 - Tobin, Martin D A1 - London, Stephanie J KW - Cohort Studies KW - Databases, Genetic KW - Follow-Up Studies KW - Forced Expiratory Volume KW - Genetic Loci KW - Genetic Predisposition to Disease KW - Genome, Human KW - Genome-Wide Association Study KW - Humans KW - Lung Diseases KW - Meta-Analysis as Topic KW - Polymorphism, Single Nucleotide KW - Prognosis KW - Quantitative Trait Loci KW - Respiratory Function Tests KW - Spirometry KW - Vital Capacity AB -

Forced vital capacity (FVC), a spirometric measure of pulmonary function, reflects lung volume and is used to diagnose and monitor lung diseases. We performed genome-wide association study meta-analysis of FVC in 52,253 individuals from 26 studies and followed up the top associations in 32,917 additional individuals of European ancestry. We found six new regions associated at genome-wide significance (P < 5 × 10(-8)) with FVC in or near EFEMP1, BMP6, MIR129-2-HSD17B12, PRDM11, WWOX and KCNJ2. Two loci previously associated with spirometric measures (GSTCD and PTCH1) were related to FVC. Newly implicated regions were followed up in samples from African-American, Korean, Chinese and Hispanic individuals. We detected transcripts for all six newly implicated genes in human lung tissue. The new loci may inform mechanisms involved in lung development and the pathogenesis of restrictive lung disease.

VL - 46 IS - 7 U1 - http://www.ncbi.nlm.nih.gov/pubmed/24929828?dopt=Abstract ER - TY - JOUR T1 - Large-scale genome-wide association studies and meta-analyses of longitudinal change in adult lung function. JF - PLoS One Y1 - 2014 A1 - Tang, Wenbo A1 - Kowgier, Matthew A1 - Loth, Daan W A1 - Soler Artigas, Maria A1 - Joubert, Bonnie R A1 - Hodge, Emily A1 - Gharib, Sina A A1 - Smith, Albert V A1 - Ruczinski, Ingo A1 - Gudnason, Vilmundur A1 - Mathias, Rasika A A1 - Harris, Tamara B A1 - Hansel, Nadia N A1 - Launer, Lenore J A1 - Barnes, Kathleen C A1 - Hansen, Joyanna G A1 - Albrecht, Eva A1 - Aldrich, Melinda C A1 - Allerhand, Michael A1 - Barr, R Graham A1 - Brusselle, Guy G A1 - Couper, David J A1 - Curjuric, Ivan A1 - Davies, Gail A1 - Deary, Ian J A1 - Dupuis, Josée A1 - Fall, Tove A1 - Foy, Millennia A1 - Franceschini, Nora A1 - Gao, Wei A1 - Gläser, Sven A1 - Gu, Xiangjun A1 - Hancock, Dana B A1 - Heinrich, Joachim A1 - Hofman, Albert A1 - Imboden, Medea A1 - Ingelsson, Erik A1 - James, Alan A1 - Karrasch, Stefan A1 - Koch, Beate A1 - Kritchevsky, Stephen B A1 - Kumar, Ashish A1 - Lahousse, Lies A1 - Li, Guo A1 - Lind, Lars A1 - Lindgren, Cecilia A1 - Liu, Yongmei A1 - Lohman, Kurt A1 - Lumley, Thomas A1 - McArdle, Wendy L A1 - Meibohm, Bernd A1 - Morris, Andrew P A1 - Morrison, Alanna C A1 - Musk, Bill A1 - North, Kari E A1 - Palmer, Lyle J A1 - Probst-Hensch, Nicole M A1 - Psaty, Bruce M A1 - Rivadeneira, Fernando A1 - Rotter, Jerome I A1 - Schulz, Holger A1 - Smith, Lewis J A1 - Sood, Akshay A1 - Starr, John M A1 - Strachan, David P A1 - Teumer, Alexander A1 - Uitterlinden, André G A1 - Völzke, Henry A1 - Voorman, Arend A1 - Wain, Louise V A1 - Wells, Martin T A1 - Wilk, Jemma B A1 - Williams, O Dale A1 - Heckbert, Susan R A1 - Stricker, Bruno H A1 - London, Stephanie J A1 - Fornage, Myriam A1 - Tobin, Martin D A1 - O'Connor, George T A1 - Hall, Ian P A1 - Cassano, Patricia A KW - Adult KW - Chromosomes, Human, Pair 11 KW - Female KW - Gene Expression Regulation KW - Genetic Loci KW - Genome-Wide Association Study KW - Humans KW - Longitudinal Studies KW - Male KW - Respiration AB -

BACKGROUND: Genome-wide association studies (GWAS) have identified numerous loci influencing cross-sectional lung function, but less is known about genes influencing longitudinal change in lung function.

METHODS: We performed GWAS of the rate of change in forced expiratory volume in the first second (FEV1) in 14 longitudinal, population-based cohort studies comprising 27,249 adults of European ancestry using linear mixed effects model and combined cohort-specific results using fixed effect meta-analysis to identify novel genetic loci associated with longitudinal change in lung function. Gene expression analyses were subsequently performed for identified genetic loci. As a secondary aim, we estimated the mean rate of decline in FEV1 by smoking pattern, irrespective of genotypes, across these 14 studies using meta-analysis.

RESULTS: The overall meta-analysis produced suggestive evidence for association at the novel IL16/STARD5/TMC3 locus on chromosome 15 (P  =  5.71 × 10(-7)). In addition, meta-analysis using the five cohorts with ≥3 FEV1 measurements per participant identified the novel ME3 locus on chromosome 11 (P  =  2.18 × 10(-8)) at genome-wide significance. Neither locus was associated with FEV1 decline in two additional cohort studies. We confirmed gene expression of IL16, STARD5, and ME3 in multiple lung tissues. Publicly available microarray data confirmed differential expression of all three genes in lung samples from COPD patients compared with controls. Irrespective of genotypes, the combined estimate for FEV1 decline was 26.9, 29.2 and 35.7 mL/year in never, former, and persistent smokers, respectively.

CONCLUSIONS: In this large-scale GWAS, we identified two novel genetic loci in association with the rate of change in FEV1 that harbor candidate genes with biologically plausible functional links to lung function.

VL - 9 IS - 7 U1 - http://www.ncbi.nlm.nih.gov/pubmed/24983941?dopt=Abstract ER - TY - JOUR T1 - Integrative pathway genomics of lung function and airflow obstruction. JF - Hum Mol Genet Y1 - 2015 A1 - Gharib, Sina A A1 - Loth, Daan W A1 - Soler Artigas, Maria A1 - Birkland, Timothy P A1 - Wilk, Jemma B A1 - Wain, Louise V A1 - Brody, Jennifer A A1 - Obeidat, Ma'en A1 - Hancock, Dana B A1 - Tang, Wenbo A1 - Rawal, Rajesh A1 - Boezen, H Marike A1 - Imboden, Medea A1 - Huffman, Jennifer E A1 - Lahousse, Lies A1 - Alves, Alexessander C A1 - Manichaikul, Ani A1 - Hui, Jennie A1 - Morrison, Alanna C A1 - Ramasamy, Adaikalavan A1 - Smith, Albert Vernon A1 - Gudnason, Vilmundur A1 - Surakka, Ida A1 - Vitart, Veronique A1 - Evans, David M A1 - Strachan, David P A1 - Deary, Ian J A1 - Hofman, Albert A1 - Gläser, Sven A1 - Wilson, James F A1 - North, Kari E A1 - Zhao, Jing Hua A1 - Heckbert, Susan R A1 - Jarvis, Deborah L A1 - Probst-Hensch, Nicole A1 - Schulz, Holger A1 - Barr, R Graham A1 - Jarvelin, Marjo-Riitta A1 - O'Connor, George T A1 - Kähönen, Mika A1 - Cassano, Patricia A A1 - Hysi, Pirro G A1 - Dupuis, Josée A1 - Hayward, Caroline A1 - Psaty, Bruce M A1 - Hall, Ian P A1 - Parks, William C A1 - Tobin, Martin D A1 - London, Stephanie J KW - Airway Obstruction KW - Animals KW - Cell Proliferation KW - European Continental Ancestry Group KW - Genetic Predisposition to Disease KW - Genome-Wide Association Study KW - Genomics KW - Humans KW - Immune System KW - Lung KW - Male KW - Metabolic Networks and Pathways KW - Mice KW - Phenotype KW - Polymorphism, Single Nucleotide KW - Signal Transduction AB -

Chronic respiratory disorders are important contributors to the global burden of disease. Genome-wide association studies (GWASs) of lung function measures have identified several trait-associated loci, but explain only a modest portion of the phenotypic variability. We postulated that integrating pathway-based methods with GWASs of pulmonary function and airflow obstruction would identify a broader repertoire of genes and processes influencing these traits. We performed two independent GWASs of lung function and applied gene set enrichment analysis to one of the studies and validated the results using the second GWAS. We identified 131 significantly enriched gene sets associated with lung function and clustered them into larger biological modules involved in diverse processes including development, immunity, cell signaling, proliferation and arachidonic acid. We found that enrichment of gene sets was not driven by GWAS-significant variants or loci, but instead by those with less stringent association P-values. Next, we applied pathway enrichment analysis to a meta-analyzed GWAS of airflow obstruction. We identified several biologic modules that functionally overlapped with those associated with pulmonary function. However, differences were also noted, including enrichment of extracellular matrix (ECM) processes specifically in the airflow obstruction study. Network analysis of the ECM module implicated a candidate gene, matrix metalloproteinase 10 (MMP10), as a putative disease target. We used a knockout mouse model to functionally validate MMP10's role in influencing lung's susceptibility to cigarette smoke-induced emphysema. By integrating pathway analysis with population-based genomics, we unraveled biologic processes underlying pulmonary function traits and identified a candidate gene for obstructive lung disease.

VL - 24 IS - 23 U1 - http://www.ncbi.nlm.nih.gov/pubmed/26395457?dopt=Abstract ER - TY - JOUR T1 - Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks. JF - Nat Genet Y1 - 2018 A1 - Demenais, Florence A1 - Margaritte-Jeannin, Patricia A1 - Barnes, Kathleen C A1 - Cookson, William O C A1 - Altmüller, Janine A1 - Ang, Wei A1 - Barr, R Graham A1 - Beaty, Terri H A1 - Becker, Allan B A1 - Beilby, John A1 - Bisgaard, Hans A1 - Bjornsdottir, Unnur Steina A1 - Bleecker, Eugene A1 - Bønnelykke, Klaus A1 - Boomsma, Dorret I A1 - Bouzigon, Emmanuelle A1 - Brightling, Christopher E A1 - Brossard, Myriam A1 - Brusselle, Guy G A1 - Burchard, Esteban A1 - Burkart, Kristin M A1 - Bush, Andrew A1 - Chan-Yeung, Moira A1 - Chung, Kian Fan A1 - Couto Alves, Alexessander A1 - Curtin, John A A1 - Custovic, Adnan A1 - Daley, Denise A1 - de Jongste, Johan C A1 - Del-Rio-Navarro, Blanca E A1 - Donohue, Kathleen M A1 - Duijts, Liesbeth A1 - Eng, Celeste A1 - Eriksson, Johan G A1 - Farrall, Martin A1 - Fedorova, Yuliya A1 - Feenstra, Bjarke A1 - Ferreira, Manuel A A1 - Freidin, Maxim B A1 - Gajdos, Zofia A1 - Gauderman, Jim A1 - Gehring, Ulrike A1 - Geller, Frank A1 - Genuneit, Jon A1 - Gharib, Sina A A1 - Gilliland, Frank A1 - Granell, Raquel A1 - Graves, Penelope E A1 - Gudbjartsson, Daniel F A1 - Haahtela, Tari A1 - Heckbert, Susan R A1 - Heederik, Dick A1 - Heinrich, Joachim A1 - Heliövaara, Markku A1 - Henderson, John A1 - Himes, Blanca E A1 - Hirose, Hiroshi A1 - Hirschhorn, Joel N A1 - Hofman, Albert A1 - Holt, Patrick A1 - Hottenga, Jouke A1 - Hudson, Thomas J A1 - Hui, Jennie A1 - Imboden, Medea A1 - Ivanov, Vladimir A1 - Jaddoe, Vincent W V A1 - James, Alan A1 - Janson, Christer A1 - Jarvelin, Marjo-Riitta A1 - Jarvis, Deborah A1 - Jones, Graham A1 - Jonsdottir, Ingileif A1 - Jousilahti, Pekka A1 - Kabesch, Michael A1 - Kähönen, Mika A1 - Kantor, David B A1 - Karunas, Alexandra S A1 - Khusnutdinova, Elza A1 - Koppelman, Gerard H A1 - Kozyrskyj, Anita L A1 - Kreiner, Eskil A1 - Kubo, Michiaki A1 - Kumar, Rajesh A1 - Kumar, Ashish A1 - Kuokkanen, Mikko A1 - Lahousse, Lies A1 - Laitinen, Tarja A1 - Laprise, Catherine A1 - Lathrop, Mark A1 - Lau, Susanne A1 - Lee, Young-Ae A1 - Lehtimäki, Terho A1 - Letort, Sébastien A1 - Levin, Albert M A1 - Li, Guo A1 - Liang, Liming A1 - Loehr, Laura R A1 - London, Stephanie J A1 - Loth, Daan W A1 - Manichaikul, Ani A1 - Marenholz, Ingo A1 - Martinez, Fernando J A1 - Matheson, Melanie C A1 - Mathias, Rasika A A1 - Matsumoto, Kenji A1 - Mbarek, Hamdi A1 - McArdle, Wendy L A1 - Melbye, Mads A1 - Melén, Erik A1 - Meyers, Deborah A1 - Michel, Sven A1 - Mohamdi, Hamida A1 - Musk, Arthur W A1 - Myers, Rachel A A1 - Nieuwenhuis, Maartje A E A1 - Noguchi, Emiko A1 - O'Connor, George T A1 - Ogorodova, Ludmila M A1 - Palmer, Cameron D A1 - Palotie, Aarno A1 - Park, Julie E A1 - Pennell, Craig E A1 - Pershagen, Göran A1 - Polonikov, Alexey A1 - Postma, Dirkje S A1 - Probst-Hensch, Nicole A1 - Puzyrev, Valery P A1 - Raby, Benjamin A A1 - Raitakari, Olli T A1 - Ramasamy, Adaikalavan A1 - Rich, Stephen S A1 - Robertson, Colin F A1 - Romieu, Isabelle A1 - Salam, Muhammad T A1 - Salomaa, Veikko A1 - Schlünssen, Vivi A1 - Scott, Robert A1 - Selivanova, Polina A A1 - Sigsgaard, Torben A1 - Simpson, Angela A1 - Siroux, Valérie A1 - Smith, Lewis J A1 - Solodilova, Maria A1 - Standl, Marie A1 - Stefansson, Kari A1 - Strachan, David P A1 - Stricker, Bruno H A1 - Takahashi, Atsushi A1 - Thompson, Philip J A1 - Thorleifsson, Gudmar A1 - Thorsteinsdottir, Unnur A1 - Tiesler, Carla M T A1 - Torgerson, Dara G A1 - Tsunoda, Tatsuhiko A1 - Uitterlinden, André G A1 - van der Valk, Ralf J P A1 - Vaysse, Amaury A1 - Vedantam, Sailaja A1 - von Berg, Andrea A1 - von Mutius, Erika A1 - Vonk, Judith M A1 - Waage, Johannes A1 - Wareham, Nick J A1 - Weiss, Scott T A1 - White, Wendy B A1 - Wickman, Magnus A1 - Widen, Elisabeth A1 - Willemsen, Gonneke A1 - Williams, L Keoki A1 - Wouters, Inge M A1 - Yang, James J A1 - Zhao, Jing Hua A1 - Moffatt, Miriam F A1 - Ober, Carole A1 - Nicolae, Dan L AB -

We examined common variation in asthma risk by conducting a meta-analysis of worldwide asthma genome-wide association studies (23,948 asthma cases, 118,538 controls) of individuals from ethnically diverse populations. We identified five new asthma loci, found two new associations at two known asthma loci, established asthma associations at two loci previously implicated in the comorbidity of asthma plus hay fever, and confirmed nine known loci. Investigation of pleiotropy showed large overlaps in genetic variants with autoimmune and inflammatory diseases. The enrichment in enhancer marks at asthma risk loci, especially in immune cells, suggested a major role of these loci in the regulation of immunologically related mechanisms.

VL - 50 IS - 1 ER -